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Data Processing Resources: Command-line Interface (CLI) for CSV, TSV, JSON, and XML


UPDATE on 8-Feb-2019: Added BigBash It!

UPDATE on 3-Jan-2019: Added GNU datamash for CSV processing

UPDATE on 24-Oct-2018: Added gron for JSON processing.

Sometimes you don’t want pandas, tidyverse, Excel, or PostgreSQL. You know they are very powerful and flexible, you know if you’re already using them daily you can utilize them. But sometimes you just want to be left alone with your CVS, TSV, JSON and XML files, process them quickly on the command line, and get done with it. And you want something a little more specialized than awk , cut, and sed.

This list is by no means complete and authoritative. I compiled this as a reference that I can come back later. If you have other suggestions that are according to the spirit of this article, feel free to share them by writing a comment at the end. Without further ado, here’s my list:

  • xsv: A fast CSV command line toolkit written by the author of ripgrep. It’s useful for indexing, slicing, analyzing, splitting and joining CSV files.
  • q: run SQL directly on CSV or TSV files.
  • csvkit: a suite of command-line tools for converting to and working with CSV, the king of tabular file formats.
  • textql: execute SQL against structured text like CSV or TSV.
  • miller: like awk, sed, cut, join, and sort for name-indexed data such as CSV, TSV, and tabular JSON. You get to work with your data using named fields, without needing to count positional column indices.
  • agate: a Python data analysis library that is optimized for humans instead of machines. It is an alternative to numpy and pandas that solves real-world problems with readable code.

Honorable mentions:

  • GNU datamash: a command-line program which performs basic numeric, textual and statistical operations on input textual data files. See examples & one-liners.
  • SQLite: import a CSV File Into an SQLite Table, and use plain SQL to query it.
  • csv-mode for Emacs: sort, align, transpose, and manage rows and fields of CSV files.
  • lnav: the Log Navigator. See the tutorial in Linux Magazine.
  • jq: this one is THE tool for processing JSON on the command-line. It’s like sed for JSON data – you can use it to slice and filter and map and transform structured data with the same ease that sed, awk, grep and friends let you play with text.
  • gron: transforms JSON into discrete assignments to make it easier to grep for what you want and see the absolute path to it. (Why shouldn’t you just use jq?)
  • jid: JSON Incremental Digger, drill down JSON interactively by using filtering queries like jq.
  • jiq: jid with jq.
  • JMESPath tutorial: a query language for JSON. You can extract and transform elements from a JSON document. There are a lot of implementations at http://jmespath.org/libraries.html and the CLI implementation is jp.
  • BigBash It!: converts your SQL SELECT queries into an autonomous Bash one-liner that can be executed on almost any *nix device to make quick analyses or crunch GB of log files in CSV format. Perfectly suited for Big Data tasks on your local machine. Source code available at https://github.com/Borisvl/bigbash

Finally the CLI for XML:

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Posted by on July 10, 2018 in Linux, Programlama

 

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